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Advancing NMR measurement of biomolecular dynamics

NMR research at NYSBC sits at the intersection of methods development and biological discovery. Staff scientists are active contributors to CoMD/NMR (the NIH-funded Center on Macromolecular Dynamics by NMR Spectroscopy), which develops, validates, and disseminates NMR methods for studying biomolecular dynamics and structure. This dual focus—developing new experimental and analytical tools while applying them to fundamental biological questions—allows NYSBC to identify bottlenecks, test innovations, and share advances with the broader research community.

Research themes span solution-state and solid-state NMR, dynamic nuclear polarization, high-resolution relaxometry, and the development of new probe technologies and pulse sequences. Recent capabilities include North America’s only 800 MHz MAS cryoprobe and the Bruker Fast Shuttle system (to be installed in 2026), both of which expand the range of experiments that examine conformational dynamics, protein folding, enzyme catalysis, and molecular recognition. Staff scientists work directly with users on experimental design and analysis, co-authoring publications and serving as active collaborators on projects from member institutions and national users.

Publications

Direct Determination of Protein Rotational Diffusion Tensors and Generalized Order Parameters from Multifield 15N NMR Spin Relaxation

Justin P. Williams, Arthur G. Palmer

Journal of the American Chemical Society, Vol. 148, Issue 26, Pages 27030-27034

2026 July

Structural studies of an antinecroptosis viral:human functional heteroamyloid M45:RIPK3 using SSNMR

Chengming He, Nikhil R. Varghese, Eric G. Keeler, Chi L. L. Pham, Teng Xie, Brayden Williams, Stephan Tetter, Crystal Semaan, Karyn L. Wilde, Simon H. J. Brown, James C. Bouwer, Yann Gambin, Emma Sierecki, Megan Steain, Ruhong Zhou, Margaret Sunde, Ann E. McDermott

Proceedings of the National Academy of Sciences of the United States of America, Vol. 123, Issue 18

2026 January

Water-mediated reconfigurable topology and mechanics in porous peptide materials

Vignesh Athiyarath, Elma Naranjo, Dhwanit Dave, Osman Goni Ridwan, Danilo A. Arturo Rodriguez, Qiang Zhu, Marta Monti, Gonzalo Díaz Mirón, Debarshi Banerjee, Ali Hassanali, Michelle C. Neary, Eric G. Keeler, Sheng Zhang, Rein V. Ulijn, Xi Chen

Matter, Vol. 9, Issue 4, Pages 102669

2026 January

A steady-state approach for analysis of high-resolution relaxometry

Shibani Bhattacharya, Michael Goger, Tassadite Dahmane, Arthur G. Palmer

Journal of Magnetic Resonance, Vol. 381, Pages 107989

2025 December

Probing rare and short-lived conformational states in nucleic acids using off-resonance carbonyl and guanidino carbon R<sub>1ρ</sub> relaxation dispersion.

Supriya Pratihar, Yeongjoon Lee, Ainan Geng, Shibani Bhattacharya, Hashim M. Al-Hashimi

Journal of magnetic resonance (San Diego, Calif. : 1997), Vol. 377, Pages 107910

2025 May

Binding of small molecules at the P-stalk site of ricin A subunit trigger conformational changes that extend into the active site.

John E. McLaughlin, Michael J. Rudolph, Arkajyoti Dutta, Xiao-Ping Li, Anastasiia M. Tsymbal, Yang Chen, Shibani Bhattacharya, Benjamin Algava, Michael Goger, Jacques Y. Roberge, Nilgun E. Tumer

The Journal of biological chemistry, Vol. 301, Issue 3, Pages 108310

2025 February

Parsing Dynamics of Protein Backbone NH and Side-Chain Methyl Groups using Molecular Dynamics Simulations

Nooriel E. Banayan, Andrew Hsu, John F. Hunt, Arthur G. Palmer, Richard A. Friesner

Journal of Chemical Theory and Computation, Vol. 20, Issue 14, Pages 6316-6327

2024 July

Deuterium spin relaxation of fractionally deuterated ribonuclease H using paired 475 and 950 MHz NMR spectrometers.

Shibani Bhattacharya, Kristen M. Varney, Tassadite Dahmane, Bruce A. Johnson, David J. Weber, Arthur G. Palmer

Journal of biomolecular NMR, Vol. 78, Issue 3, Pages 169-177

2024 June

Breaking down walls: Continuous potential models for internal motions in NMR spin relaxation

Arthur G. Palmer

Journal of Magnetic Resonance, Vol. 363, Pages 107705

2024 June

<sup>1</sup>H, <sup>13</sup>C, and <sup>15</sup>N backbone and methyl group resonance assignments of ricin toxin A subunit.

Shibani Bhattacharya, Tassadite Dahmane, Michael J. Goger, Michael J. Rudolph, Nilgun E. Tumer

Biomolecular NMR assignments, Vol. 18, Issue 1, Pages 85-91

2024 April

Calcium mediated static and dynamic allostery in S100A12: Implications for target recognition by S100 proteins.

Qian Wang, Christopher DiForte, Aleksey Aleshintsev, Gianna Elci, Shibani Bhattacharya, Angelo Bongiorno, Rupal Gupta

Protein science : a publication of the Protein Society, Vol. 33, Issue 4

2024 April

Controlling Hydrophobicity of Colloidal Silica to Promote Miscibility in Polymer Nanocomposites

Marshall C. Tekell, Kewei Wu, Eric G. Keeler, Nicholas F. Mendez, Jingchao Qin, Yipeng Zhang, Bridgie Cawthon

Macromolecules, Vol. 57, Issue 10, Pages 4963-4977

2024 January

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