NMR Publications
2019
Identifying coupled clusters of allostery participants through chemical shift perturbations. Xu Y, Zhang D, Rogawski R, Nimigean CM, McDermott AE Proceedings of the National Academy of Sciences of the United States of America 116 2078-2085 2019 Feb 5 Link
2018
Mompeán M, Li W, Li J, Laage S, Siemer AB, Bozkurt G, Wu H, McDermott AE. The Structure of the Necrosome RIPK1-RIPK3 Core, a Human Hetero-Amyloid Signaling Complex, Cell. 2018 Apr 16. pii: S0092-8674(18)30312-X. doi: 10.1016/j.cell.2018.03.032. [Epub ahead of print] PMID:29681455 Link
Hayama R, Sparks S, Hecht LM, Dutta K, Cabana CM, Karp JM, Rout MP, Cowburn D. Thermodynamic characterization of the multivalent interactions underlying rapid and selective translocation through the nuclear pore complex. J Biol Chem. 2018 Jan 26. pii: jbc.AC117.001649. doi: 10.1074/jbc.AC117.001649. [Epub ahead of print] PMID:29374059 Link
Keeler EG, Fritzsching KJ, McDermott AE. Refocusing CSA during magic angle spinning rotating-frame relaxation experiments. J Magn Reson. 2018 Nov;296:130-137. doi: 10.1016/j.jmr.2018.09.004. Epub 2018 Sep 14. PMID:30253322 Link
Chatterjee S, Prados-Rosales R, Tan S, Phan VC, Chrissian C, Itin B, Wang H, Khajo A, Magliozzo RS, Casadevall A, Stark RE. The melanization road more traveled by: precursor substrate effects on melanin synthesis in cell-free and fungal cell systems. J Biol Chem. 2018 Nov 1. pii: jbc.RA118.005791. doi: 10.1074/jbc.RA118.005791. [Epub ahead of print] PMID:30385508 Link
Lv G, Kumar A, Huang Y, Eliezer D. A Protofilament-Protofilament Interface in the Structure of Mouse α-Synuclein Fibrils. Biophys J. 2018 Jun 19;114(12):2811-2819. doi: 10.1016/j.bpj.2018.05.011. PMID:29925018
Hsu A, O’Brien PA, Bhattacharya S, Rance M, Palmer AG 3rd. Enhanced spectral density mapping through combined multiple-field deuterium 13CH2D methyl spin relaxation NMR spectroscopy. Methods. 2018 Apr 1;138-139:76-84. doi: 10.1016/j.ymeth.2017.12.020. Epub 2017 Dec 27. PMID:29288801Link
O’Brien PA, Palmer AG 3rd. TROSY pulse sequence for simultaneous measurement of the 15N R1 and {1H}-15N NOE in deuterated proteins. J Biomol NMR. 2018 Apr;70(4):205-209. doi: 10.1007/s10858-018-0181-6. Epub 2018 Apr 16. PMID:29663108Link
Miloushev VZ, Palmer AG 3rd. Optimized coherence selection. J Magn Reson. 2018 Oct 23;297:138-145. doi: 10.1016/j.jmr.2018.10.011. [Epub ahead of print] PMID: 30391869Link
Koss H, Rance M, Palmer AG 3rd. General Expressions for Carr-Purcell-Meiboom-Gill Relaxation Dispersion for N-Site Chemical Exchange. Biochemistry. 2018 Aug 7;57(31):4753-4763. doi: 10.1021/acs.biochem.8b00370. Epub 2018 Jul 30. PMID:30040382Link
Banigan JR, Leninger M, Her AS, Traaseth NJ. Assessing Interactions Between a Polytopic Membrane Protein and Lipid Bilayers Using Differential Scanning Calorimetry and Solid-State NMR. J Phys Chem B. 2018 Mar 1;122(8):2314-2322. doi: 10.1021/acs.jpcb.8b00479. Epub 2018 Feb 19. PMID:29457729Link
Leninger M, Marsiglia WM, Jerschow A, Traaseth NJ. Multiple frequency saturation pulses reduce CEST acquisition time for quantifying conformational exchange in biomolecules. J Biomol NMR. 2018 May;71(1):19-30. doi: 10.1007/s10858-018-0186-1. Epub 2018 May 23. PMID:29796789Link
Vugmeyster L, Griffin A, Ostrovsky D, Bhattacharya S, Nichols PJ, McKnight CJ, Vögeli B. Correlated motions of C’-N and Cα-Cβ pairs in protonated and per-deuterated GB3. J Biomol NMR. 2018 Oct;72(1-2):39-54. doi: 10.1007/s10858-018-0205-2. Epub 2018 Aug 18. PMID:30121872Link
Alphonse S, Itin B, Khayat R, Ghose R. Sequential Protein Expression and Capsid Assembly in Cell: Toward the Study of Multiprotein Viral Capsids Using Solid-State Nuclear Magnetic Resonance Techniques. Biochemistry. 2018 Mar 13;57(10):1568-1571. doi: 10.1021/acs.biochem.8b00003. Epub 2018 Feb 23. PMID: 29465229Link
Abner E, Stoszko M, Zeng L, Chen HC, Izquierdo-Bouldstridge A, Konuma T, Zorita E, Fanunza E, Zhang Q, Mahmoudi T, Zhou MM, Filion GJ, Jordan A. A New Quinoline BRD4 Inhibitor Targets a Distinct Latent HIV-1 Reservoir for Reactivation from Other “Shock” Drugs. J Virol. 2018 Apr 27;92(10). pii: e02056-17. doi: 10.1128/JVI.02056-17. Print 2018 May 15. PMID:29343578Link
Tedeschi, J. J. Benitez, L. Ceseracciu, K. Dastmalchi, B. Itin, R. E. Stark, Antonio Heredia, A. Athanassiou and J. A. Heredia-Guerrero, “Sustainable fabrication of plant cuticle-like packaging films from tomato pomace agro-waste, beeswax, and alginate,” ACS Sustainable Chemistry and Engineering, in press. Link
Analysis of NMR Spin-Relaxation Data Using an Inverse Gaussian Distribution Function. Hsu A, Ferrage F, Palmer AG 3rd Biophysical journal 115 2301-2309 2018 Dec 18 Link
Correlated motions of C’-N and Cα-Cβ pairs in protonated and per-deuterated GB3. Vugmeyster L, Griffin A, Ostrovsky D, Bhattacharya S, Nichols PJ, McKnight CJ, Vögeli B Journal of biomolecular NMR 72 39-54 2018 Oct Link
2017
Itin B, Sergeyev IV. Strategies for Efficient Sample Preparation for Dynamic Nuclear Polarization Solid-State NMR of Biological Macromolecules. Methods Mol Biol. 2018;1688:133-154. doi: 10.1007/978-1-4939-7386-6_7. PMID:29151208 Link
Rogawski RT, Sergeyev IV, Zhang Y, Tran TH, Li Y, Tong L, McDermott AE. NMR Signal Quenching from Bound Biradical Affinity Reagents in DNP Samples. J Phys Chem B. 2017 Nov 8. doi: 10.1021/acs.jpcb.7b08274. [Epub ahead of print] PMID:29116793 Link
Wang Q, Rizk S, Bernard C, Lai MP, Kam D, Storch J, Stark RE. Protocols and pitfalls in obtaining fatty acid-binding proteins for biophysical studies of ligand-protein and protein-protein interactions. Biochem Biophys Rep. 2017 May 4;10:318-324. doi: 10.1016/j.bbrep.2017.05.001. eCollection 2017 Jul. PMID:28955759 Link
Wang J, Bains H, Anastasia A, Bracken C. NMR backbone resonance assignments of the prodomain variants of BDNF in the urea denatured state. Biomol NMR Assign. 2017 Sep 20. doi: 10.1007/s12104-017-9777-0. [Epub ahead of print] PMID: 28933046 Link
Piserchio A, Warthaka M, Kaoud TS, Callaway K, Dalby KN, Ghose R. Local destabilization, rigid body, and fuzzy docking facilitate the phosphorylation of the transcription factor Ets-1 by the mitogen-activated protein kinase ERK2. Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):E6287-E6296. doi: 10.1073/pnas.1702973114. Epub 2017 Jul 17. PMID:28716922 Link
Ceñido JF, Itin B, Stark RE, Huang YY, Oquendo MA, John Mann J, Elizabeth Sublette M. Characterization of lipid rafts in human platelets using nuclear magnetic resonance: A pilot study. Biochem Biophys Rep. 2017 Mar 20;10:132-136. doi: 10.1016/j.bbrep.2017.03.005. eCollection 2017 Jul. PMID:28955740 Link
Dhital B, Durlik P, Rathod P, Gul-E-Noor F, Wang Z, Sun C, Chang EJ, Itin B, Boutis GS. Ultraviolet radiation reduces desmosine cross-links in elastin. Biochem Biophys Rep. 2017 Apr 6;10:172-177. doi: 10.1016/j.bbrep.2017.04.002. eCollection 2017 Jul. PMID:28955744 Link
Zhang Y, Li J, Boutis GS. The Coupled Bio-Chemo-Electro-Mechanical Behavior of Glucose Exposed Arterial Elastin. J Phys D Appl Phys. 2017;50. pii: 133001. doi: 10.1088/1361-6463/aa5c55. Epub 2017 Mar 2. PMID: 28989186 Link
Xu Y, Bhate MP, McDermott AE. Transmembrane allosteric energetics characterization for strong coupling between proton and potassium ion binding in the KcsA channel. Proc Natl Acad Sci U S A. 2017 Aug 2. pii: 201701330. doi: 10.1073/pnas.1701330114. [Epub ahead of print]. PubMedPMID: 28768808 Link
Stevens AJ, Sekar G, Shah NH, Mostafavi AZ, Cowburn D, Muir TW. A promiscuous split intein with expanded protein engineering applications. Proc Natl Acad Sci U S A. 2017 Aug 8;114(32):8538-8543. doi: 10.1073/pnas.1701083114. Epub 2017 Jul 24. PMID: 28739907 Link
Piserchio A, Warthaka M, Kaoud TS, Callaway K, Dalby KN, Ghose R. Local destabilization, rigid body, and fuzzy docking facilitate the phosphorylation of the transcription factor Ets-1 by the mitogen-activated protein kinase ERK2. Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):E6287-E6296. doi: 10.1073/pnas.1702973114. Epub 2017 Jul 17. PMID: 28716922 Link
Rogawski R, McDermott AE New NMR tools for protein structure and function: Spin tags for dynamic nuclear polarization solid state NMR. Arch Biochem Biophys. 2017 Aug 15;628:102-113. doi: 10.1016/j.abb.2017.06.010. Epub 2017 Jun 13. Review. PMID: 28623034 Link
Reed B, Yakovleva L, Shuman S, Ghose R . Characterization of DNA Binding by the Isolated N-Terminal Domain of Vaccinia Virus DNA Topoisomerase IB. Biochemistry. 2017 Jul 5;56(26):3307-3317. doi: 10.1021/acs.biochem.7b00042. Epub 2017 Jun 19. PMID: 28570045 Link
Wragg RT, Parisotto DA, Li Z, Terakawa MS, Snead D, Basu I, Weinstein H, Eliezer D, Dittman JS. Evolutionary Divergence of the C-terminal Domain of Complexin Accounts for Functional Disparities between Vertebrate and Invertebrate Complexins. Front Mol Neurosci. 2017 May 26;10:146. doi: 10.3389/fnmol.2017.00146. eCollection 2017. PMID: 28603484 Link
Snead D, Lai AL, Wragg RT, Parisotto DA, Ramlall TF, Dittman JS, Freed JH, Eliezer D. Unique Structural Features of Membrane-Bound C-Terminal Domain Motifs Modulate Complexin Inhibitory Function. Front Mol Neurosci. 2017 May 24;10:154. doi: 10.3389/fnmol.2017.00154. eCollection 2017. PMID: 28596722 Link
Sergeyev IV, Itin B, Rogawski R, Day LA, McDermott AE. Efficient assignment and NMR analysis of an intact virus using sequential side-chain correlations and DNP sensitization. Proc Natl Acad Sci U S A. 2017 May 16;114(20):5171-5176. doi: 10.1073/pnas.1701484114. Epub 2017 May 1. PMID: 28461483 Link
Cheung KL, Zhang F, Jaganathan A, Sharma R, Zhang Q, Konuma T, Shen T, Lee JY,Ren C, Chen CH, Lu G, Olson MR, Zhang W, Kaplan MH, Littman DR, Walsh MJ, XiongH, Zeng L, Zhou MM. Distinct Roles of Brd2 and Brd4 in Potentiating theTranscriptional Program for Th17 Cell Differentiation. Mol Cell. 2017 Mar16;65(6):1068-1080.e5. doi: 10.1016/j.molcel.2016.12.022. Epub 2017 Mar 3. PubMedPMID: 28262505; PubMed Central PMCID: PMC5357147. Link
Chen H, Marsiglia WM, Cho MK, Huang Z, Deng J, Blais SP, Gai W, BhattacharyaS, Neubert TA, Traaseth NJ, Mohammadi M. Elucidation of a four-site allostericnetwork in fibroblast growth factor receptor tyrosine kinases. Elife. 2017 Feb6;6. pii: e21137. doi: 10.7554/eLife.21137. PubMed PMID: 28166054; PubMed CentralPMCID: PMC5293489. Link
Upla P, Kim SJ, Sampathkumar P, Dutta K, Cahill SM, Chemmama IE, Williams R,Bonanno JB, Rice WJ, Stokes DL, Cowburn D, Almo SC, Sali A, Rout MP,Fernandez-Martinez J. Molecular Architecture of the Major Membrane Ring Componentof the Nuclear Pore Complex. Structure. 2017 Mar 7;25(3):434-445. doi:10.1016/j.str.2017.01.006. Epub 2017 Feb 2. PubMed PMID: 28162953; PubMed CentralPMCID: PMC5342941. Link
Karp JM, Sparks S, Cowburn D. Effects of FGFR2 kinase activation loop dynamicson catalytic activity. PLoS Comput Biol. 2017 Feb 2;13(2):e1005360. doi:10.1371/journal.pcbi.1005360. eCollection 2017 Feb. PubMed PMID: 28151998; PubMedCentral PMCID: PMC5313233. Link
Rogawski R, Sergeyev IV, Li Y, Ottaviani MF, Cornish V, McDermott AE. Dynamic Nuclear Polarization Signal Enhancement with High-Affinity Biradical Tags. J PhysChem B. 2017 Feb 16;121(6):1169-1175. doi: 10.1021/acs.jpcb.6b09021. Epub 2017Feb 6. PubMed PMID: 28099013. Link
Koss H, Rance M, Palmer AG 3rd. General expressions for R(1)(ρ) relaxation forN-site chemical exchange and the special case of linear chains. J Magn Reson.2017 Jan;274:36-45. doi: 10.1016/j.jmr.2016.10.015. Epub 2016 Oct 27. PubMedPMID: 27866072; PubMed Central PMCID: PMC5199238. Link
Aiyegbo MS, Shmelkov E, Dominguez L, Goger M, Battacharya S, deCamp AC, Gilbert PB, Berman PW, Cardozo T. Peptide Targeted by Human Antibodies Associated with HIV Vaccine-Associated Protection Assumes a Dynamic α-Helical Structure. PLoS One. 2017 Jan 20;12(1):e0170530. PMID: 28107435. Link
2016
Aguilar JL, Varshney AK, Pechuan X, Dutta K, Nosanchuk JD, Fries BC. Monoclonal antibodies protect from Staphylococcal Enterotoxin K (SEK) induced toxic shock and sepsis by USA300 Staphylococcus aureus. Virulence. 2016 Oct 7:1-10. PMID: 27715466. Link
Liu D, Cowburn D. Combining biophysical methods to analyze the disulfide bond in SH2 domain of C-terminal Src kinase. Biophys Rep. 2016;2(1):33-43. Epub 2016Jul 1. PubMed PMID: 27819029; PubMed Central PMCID: PMC5071372. Link
Corrêa F, Key J, Kuhlman B, Gardner KH. Computational Repacking of HIF-2αCavity Replaces Water-Based Stabilized Core. Structure. 2016 Nov1;24(11):1918-1927. doi: 10.1016/j.str.2016.08.014. Epub 2016 Sep 22. PubMedPMID: 27667693. Link
Hernández G, LeMaster DM. Quantifying protein dynamics in the ps-ns timeregime by NMR relaxation. J Biomol NMR. 2016 Nov;66(3):163-174. Epub 2016 Oct 12.PubMed PMID: 27734179. Link
Liu D, Cowburn D. Segmental Isotopic Labeling of Proteins for NMR Study UsingIntein Technology. Methods Mol Biol. 2017;1495:131-145. PubMed PMID: 27714614. Link
Will N, Piserchio A, Snyder I, Ferguson SB, Giles DH, Dalby KN, Ghose R.Structure of the C-Terminal Helical Repeat Domain of Eukaryotic Elongation Factor2 Kinase. Biochemistry. 2016 Sep 27;55(38):5377-86. doi:10.1021/acs.biochem.6b00711. Epub 2016 Sep 14. PubMed PMID: 27571275; PubMedCentral PMCID: PMC5266509. Link
Zhang Q, Zeng L, Zhao C, Ju Y, Konuma T, Zhou MM. Structural Insights into Histone Crotonyl-Lysine Recognition by the AF9 YEATS Domain. Structure. 2016 Sep 6;24(9):1606-12. doi: 10.1016/j.str.2016.05.023. Epub 2016 Aug 18. PubMed PMID:27545619; PubMed Central PMCID: PMC5014688. Link
Corrêa F, Gardner KH. Basis of Mutual Domain Inhibition in a BacterialResponse Regulator. Cell Chem Biol. 2016 Aug 18;23(8):945-954. doi:10.1016/j.chembiol.2016.07.010. Epub 2016 Aug 11. PubMed PMID: 27524295; PubMedCentral PMCID: PMC5159254. Link
Lee K, Alphonse S, Piserchio A, Tavares CD, Giles DH, Wellmann RM, Dalby KN, Ghose R. Structural Basis for the Recognition of Eukaryotic Elongation Factor 2Kinase by Calmodulin. Structure. 2016 Sep 6;24(9):1441-51. doi:10.1016/j.str.2016.06.015. Epub 2016 Aug 4. PubMed PMID: 27499441; PubMed CentralPMCID: PMC5014583. Link
Kim C, Lv G, Lee JS, Jung BC, Masuda-Suzukake M, Hong CS, Valera E, Lee HJ,Paik SR, Hasegawa M, Masliah E, Eliezer D, Lee SJ. Exposure to bacterialendotoxin generates a distinct strain of α-synuclein fibril. Sci Rep. 2016 Aug4;6:30891. doi: 10.1038/srep30891. PubMed PMID: 27488222; PubMed Central PMCID:PMC4973277. Link
Kim DM, Dikiy I, Upadhyay V, Posson DJ, Eliezer D, Nimigean CM.Conformational heterogeneity in closed and open states of the KcsA potassiumchannel in lipid bicelles. J Gen Physiol. 2016 Aug;148(2):119-32. doi:10.1085/jgp.201611602. Epub 2016 Jul 18. PubMed PMID: 27432996; PubMed CentralPMCID: PMC4969796. Link
Dhital B, Gul-E-Noor F, Downing KT, Hirsch S, Boutis GS. Pregnancy-InducedDynamical and Structural Changes of Reproductive Tract Collagen. Biophys J. 2016 Jul 12;111(1):57-68. doi: 10.1016/j.bpj.2016.05.049. PubMed PMID: 27410734;PubMed Central PMCID: PMC4944529. Link
Ren C, Zeng L, Zhou MM. Preparation, Biochemical Analysis, and StructureDetermination of the Bromodomain, an Acetyl-Lysine Binding Domain. MethodsEnzymol. 2016;573:321-43. doi: 10.1016/bs.mie.2016.01.018. Epub 2016 Mar 24.PubMed PMID: 27372760. Link
Dikiy I, Fauvet B, Jovičić A, Mahul-Mellier AL, Desobry C, El-Turk F, Gitler AD, Lashuel HA, Eliezer D. Semisynthetic and in Vitro Phosphorylation ofAlpha-Synuclein at Y39 Promotes Functional Partly Helical Membrane-Bound StatesResembling Those Induced by PD Mutations. ACS Chem Biol. 2016 Sep16;11(9):2428-37. doi: 10.1021/acschembio.6b00539. Epub 2016 Jul 11. PubMed PMID:27356045; PubMed Central PMCID: PMC5240779. Link
Zhang Q, Zeng L, Shen C, Ju Y, Konuma T, Zhao C, Vakoc CR, Zhou MM.Structural Mechanism of Transcriptional Regulator NSD3 Recognition by the ETDomain of BRD4. Structure. 2016 Jul 6;24(7):1201-8. doi:10.1016/j.str.2016.04.019. Epub 2016 Jun 9. PubMed PMID: 27291650; PubMed CentralPMCID: PMC4938737. Link
Athuluri-Divakar SK, Vasquez-Del Carpio R, Dutta K, Baker SJ, Cosenza SC, Basu I, Gupta YK, Reddy MV, Ueno L, Hart JR, Vogt PK, Mulholland D, Guha C, Aggarwal AK, Reddy EP. A Small Molecule RAS-Mimetic Disrupts RAS Association with Effector Proteins to Block Signaling. Cell. 2016 Apr 21;165(3):643-55. PMID:27104980. Link
Raveh B, Karp JM, Sparks S, Dutta K, Rout MP, Sali A, Cowburn D. Slide-and-exchange mechanism for rapid and selective transport through the nuclear pore complex. Proc Natl Acad Sci U S A. 2016 May 3;113(18):E2489-97. PMID: 27091992. Link
Natarajan A, Nadarajah V, Felsovalyi K, Wang W, Jeyachandran VR, Wasson RA,Cardozo T, Bracken C, Krogsgaard M. Structural Model of the ExtracellularAssembly of the TCR-CD3 Complex. Cell Rep. 2016 Mar 29;14(12):2833-45. doi:10.1016/j.celrep.2016.02.081. Epub 2016 Mar 17. PubMed PMID: 26997265; PubMedCentral PMCID: PMC4902171. Link
Gayen A, Leninger M, Traaseth NJ. Protonation of a glutamate residuemodulates the dynamics of the drug transporter EmrE. Nat Chem Biol. 2016Mar;12(3):141-5. doi: 10.1038/nchembio.1999. Epub 2016 Jan 11. PubMed PMID:26751516; PubMed Central PMCID: PMC4755857. Link
Huang Z, Marsiglia WM, Basu Roy U, Rahimi N, Ilghari D, Wang H, Chen H, GaiW, Blais S, Neubert TA, Mansukhani A, Traaseth NJ, Li X, Mohammadi M. Two FGFReceptor Kinase Molecules Act in Concert to Recruit and TransphosphorylatePhospholipase Cγ. Mol Cell. 2016 Jan 7;61(1):98-110. doi:10.1016/j.molcel.2015.11.010. Epub 2015 Dec 10. Erratum in: Mol Cell. 2016 Jan21;61(2):324. PubMed PMID: 26687682; PubMed Central PMCID: PMC4838190. Link
2015
Ferrage F, Dutta K, Cowburn D. Identification of Hydrophobic Interfaces in Protein-Ligand Complexes by Selective Saturation Transfer NMR Spectroscopy. Molecules. 2015 Dec 9;20(12):21992-9. PMID: 26690112. Link
M.L. Gill, R.A. Byrd, A.G. Palmer. Dynamics of GCN4 facilitate DNA interaction: a model-free analysis of an intrinsically disordered region. Phys Chem Chem Phys. 2015 Dec 11. (Epub ahead of print).
A. Kaplan, M. M. Gaschler, D. Dunn, R. Colligan, L. M. Brown, A. G. Palmer, D. C. Lo, and B. R. Stockwell, Small-molecule-induced oxidation of protein disulfide isomerase is neuroprotective, Proc. Nat. Acad. Sci. USA 112, E2245-52 (2015). doi: 10.1073/pnas.1500439112. PMCID: PMC4418888. Link
N. Liu, Y. Tao, M. D. Brenowitz, M. E. Girvin, and J. R. Lai, Structural and Functional Studies on the Marburg Virus GP2 Fusion Loop, J Infect Dis. 212, Suppl 2:S146-532015. (2015). doi:10.1093/infdis/jiv030. PMID:25786917. Link
S. Alphonse, S. Bhattacharya, H. Wang, and R. Ghose, Methyl Relaxation Measurements Reveal Patterns of Fast Dynamics in a Viral RNA-Directed RNA Polymerase, Biochemistry (2015) Sep 29;54(38):5828-38. PMID:26333183. Link
L. E. Hough, K. Dutta, S. Sparks, D. B. Temel, A. Kamal, J. Tetenbaum-Novatt, M. P. Rout, and D. Cowburn, The molecular mechanism of nuclear transport revealed by atomic scale measurements, Elife. 2015 Sep 15;4. pii: e10027. doi: 10.7554/eLife.10027. PubMed PMID: 26371551; PubMed Central PMCID: PMC4621360. Link
LeMaster DM, Hernandez G. Conformational Dynamics in FKBP Domains: Relevance to Molecular Signaling and Drug Design. Curr Mol Pharmacol. 2015;9(1):5-26.Review. PubMed PMID: 25986571. Link
LeMaster DM, Mustafi SM, Brecher M, Zhang J, Héroux A, Li H, Hernández G.Coupling of Conformational Transitions in the N-terminal Domain of the 51-kDaFK506-binding Protein (FKBP51) Near Its Site of Interaction with the SteroidReceptor Proteins. J Biol Chem. 2015 Jun 19;290(25):15746-57. doi:10.1074/jbc.M115.650655. Epub 2015 May 7. PubMed PMID: 25953903; PubMed CentralPMCID: PMC4505484. Link
Y. J. Kwon, K. Petrie, B. A. Leibovitch, L. Zeng, M. Mezei, L. Howell, V. Gil, R. Christova, N. Bansal, S. Yang, R. Sharma, E. V. Ariztia, J. Frankum, R. Brough, Y. Sbirkov, A. Ashworth, C. J. Lord, A. Zelent, E. Farias, M. M. Zhou, and S. Waxman, Selective Inhibition of SIN3 Corepressor with Avermectins as a Novel Therapeutic Strategy in Triple-Negative Breast Cancer, Mol Cancer Ther. 14,1824-36 (2015). doi:10.1158/1535-7163.MCT-14-0980-T. PMID:26078298. Link
K. Dastmalchi, L. Kallash, I. Wang, V. C. Phan, W. Huang, O. Serra, and R. E. Stark, Defensive Armor of Potato Tubers: Nonpolar Metabolite Profiling, Antioxidant Assessment, and Solid-State NMR Compositional Analysis of Suberin-Enriched Wound-Healing Tissues, J Agric Food Chem. 63, 6810-22 (2015) doi:10.1021/acs.jafc.5b03206. PMID:26166447. Link
D. M. LeMaster, S. M. Mustafi, M. Brecher, J. Zhang, A. Héroux, H. Li, and G. Hernández, Coupling of Conformational Transitions in the N-terminal Domain of the 51-kDa FK506-binding Protein (FKBP51) Near Its Site of Interaction with the Steroid Receptor Proteins, J Biol Chem. 290,15746-57 (2015) doi:10.1074/jbc.M115.650655. PMID:25953903. Link
A. Piserchio, V. Ramakrishan, H. Wang, T.S. Kaoud, B. Arshava, K. Dutta, K. N. Dalby, and R. Ghose, Structural and Dynamic Features of F-recruitment Site Driven Substrate Phosphorylation by ERK2, Sci Rep. 5, 11127 (2015). doi:10.1038/srep11127. PMID:26054059. Link
S. Chatterjee, R. Prados-Rosales, B. Itin, A. Casadevall, and R. E. Stark, Solid-state NMR Reveals the Carbon-based Molecular Architecture of Cryptococcus neoformans Fungal Eumelanins in the Cell Wall, J Biol Chem. 290, 13779-90 (2015). doi:10.1074/jbc.M114.618389. PMID:25825492. Link
R. Q. Notti, S. Bhattacharya, M. Lilic, and C. E. Stebbins, A common assembly module in injectisome and flagellar type III secretion sorting platforms, Nat Commun. 6, 7125 (2015). doi:10.1038/ncomms8125. PMID:25994170. Link
D. M. LeMaster, and G. Hernandez, Conformational Dynamics in FKBP Domains: Relevance to Molecular Signaling and Drug Design, Curr Mol Pharmacol. (2015) 9(1):5-26. PubMed PMID: 25986571. Link
K. Dutta, A. K. Varshney, M. C. Franklin, M. Goger, X. Wang, and B. C. Fries, Mechanisms mediating enhanced neutralization efficacy of staphylococcal enterotoxin B by combinations of monoclonal antibodies, J Biol Chem. 290, (2015) 6715-30 2015. doi:10.1074/jbc.M114.630715. PMID:25572397. Link
Z. Dai, Y. Tao, N. Liu, M. D. Brenowitz, M. E. Girvin, and J. R. Lai, Conditional trimerization and lytic activity of HIV-1 gp41 variants containing the membrane-associated segments, Biochemistry 54, 1589-99 (2015). doi:10.1021/bi501376f. PMID:25658332. Link
C. Ren, K. Morohashi, A. N. Plotnikov, J. Jakoncic, S. G. Smith, J. Li, L. Zeng, Y. Rodriguez, V. Stojanoff , M. Walsh, and M. M. Zhou, Small-molecule modulators of methyl-lysine binding for the CBX7 chromodomain, Chem Biol. 22, 161-8 (2015). doi:10.1016/j.chembiol.2014.11.021. PMID:25660273. Link
S. E. Wilner, S. E. Sparks, D. Cowburn, M. E. Girvin, and M. Levy, Controlling lipid micelle stability using oligonucleotide headgroups, J Am Chem Soc. 137, 2171-4 2015 Feb 18;. doi: 10.1021/ja512012m. PMID:25634639. Link
J. M. Karp, E. Eryilmaz, and D. Cowburn, Correlation of chemical shifts predicted by molecular dynamics simulations for partially disordered proteins, J Biomol NMR. 61, 35-45 (2015). doi:10.1007/s10858-014-9879-2. PMID: 25416617. Link
J. R. Banigan, A. Gayen, M. K. Cho, and N. J. Traaseth NJ, A structured loop modulates coupling between the substrate-binding and dimerization domains in the multidrug resistance transporter EmrE, J Biol Chem. 290, 805-14 (2015). doi:10.1074/jbc.M114.601963. PMID:25406320. Link
S. Laage, Y. Tao, and A. E. McDermott AE, Cardiolipin interaction with subunit c of ATP synthase: solid-state NMR characterization, Biochim Biophys Acta. 1848, 260-5 (2015). doi:10.1016/j.bbamem.2014.08.021. PMID:25168468. Link
2014
M. L. Gill, A. G. Palmer, Local isotropic diffusion approximation for coupled internal and overall molecular motions in NMR spin relaxation, J Phys Chem B. 118, 11120-8 (2014). doi:10.1021/jp506580c. PMID:25167331. Link
B. Ergel, M. L. Gill, L. Brown, B. Yu, A. G. Palmer, and J. F. Hunt, Protein dynamics control progression of the catalytic reaction cycle of AlkB, J. Biol. Chem. 289, 29584-29601 (2014). doi: 10.1074/jbc.M114.575647. PMCID: PMC4207975. Link
Y. Li, A. G. Palmer, Rotation operator propagators for time-varying radiofrequency pulses in NMR spectroscopy: applications to shaped pulses and pulse trains, J Magn Reson. 248, 105-14. (2014). doi: 10.1016/j.jmr.2014.09.001. PMCID: PMC4254566. Link
S. Alphonse, J. J. Arnold, S. Bhattacharya, H. Wang, B. Kloss, C. E. Cameron, and R. Ghose, Cystoviral polymerase complex protein P7 uses its acidic C-terminal tail to regulate the RNA-directed RNA polymerase P2, J Mol Biol. 426, 2580-93 (2014) doi:10.1016/j.jmb.2014.04.028. PMID:24813120. Link
D. Snead, and D. Eliezer, Alpha-synuclein function and dysfunction on cellular membranes, Exp Neurobiol. 23, 292-313 (2014). doi:0.5607/en.2014.23.4.292. PMID:25548530. Link
I. V. Sergeyev, S. Bahri, L. A. Day, and A. E. McDermott, Pf1 bacteriophage hydration by magic angle spinning solid-state NMR, J Chem Phys. 141, 22D533 (2014). doi:10.1063/1.4903230. PMID:25494804. Link
D. T. Radoff, Y. Dong, D. Snead, J. Bai, D. Eliezer, and J. S. Dittman, The accessory helix of complexin functions by stabilizing central helix secondary structure, Elife. 3 (2014). doi:10.7554/eLife.04553. PMID:25383924. Link
D. Snead, R. T. Wragg, J. S. Dittman, and D. Eliezer, Membrane curvature sensing by the C-terminal domain of complexin, Nat Commun. 5, 4955 (2014). doi:10.1038/ncomms5955. PMID:25229806. Link
S. Chatterjee, R. Prados-Rosales, S. Tan, B. Itin, A. Casadevall, and R. E. Stark, Demonstration of a common indole-based aromatic core in natural and synthetic eumelanins by solid-state NMR, Org Biomol Chem. 12, 6730-6 (2014). doi:10.1039/c4ob01066c. PMID:25047903. Link
O. Khalaf, B. Fauvet, A. Oueslati, I. Dikiy, A. L. Mahul-Mellier, F. S. Ruggeri, M. K. Mbefo, F. Vercruysse, G. Dietler, S. J. Lee, D. Eliezer, and H. A. Lashuel HA, The H50Q mutation enhances ?-synuclein aggregation, secretion, and toxicity, J Biol Chem. 289, 21856-76 (2014). doi:10.1074/jbc.M114.553297. PMID:24936070. Link
S. M. Mustafi, D. M. LeMaster, and G Hernández, Differential conformational dynamics in the closely homologous FK506-binding domains of FKBP51 and FKBP52, Biochem J. 461, 115-23 (2014). doi:10.1042/BJ20140232. PMID:24749623. Link
M. K. Cho, A. Gayen, J. R. Banigan, M. Leninger, and N. J. Traaseth, Intrinsic conformational plasticity of native EmrE provides a pathway for multidrug resistance, J Am Chem Soc. 136, 8072-80 (2014). doi:10.1021/ja503145x. PMID:24856154. Link
D. B. Temel, K. Dutta, and R. Ghose R, Sequence-specific backbone ¹H, ¹³C and ¹5N assignments of the catalytic domain of the Escherichia coli protein tyrosine kinase, Wzc, Biomol NMR Assign. 8, 37-41 (2014). doi:10.1007/s12104-012-9448-0. PMID: 23225198. Link
S. M. Mustafi, M. Brecher, J. Zhang, H. Li, D. M. Lemaster, and G. Hernández, Structural basis of conformational transitions in the active site and 80’s loop in the FK506-binding protein FKBP12, Biochem J. 458, 525-36 (2014). doi:10.1042/BJ20131429. PMID:24405377. Link
I. Dikiy, and D. Eliezer, N-terminal acetylation stabilizes N-terminal helicity in lipid- and micelle-bound α-synuclein and increases its affinity for physiological membranes, J Biol Chem. 289, 3652-65 (2014). doi:10.1074/jbc.M113.512459. PMID:24338013. Link